Publications
Highlighted

Practical guidelines and the EMLN R package for handling ecological multilayer networks
Methods in Ecology and Evolution
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18 Oct 2023
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doi:10.1111/2041-210X.14225
EMLN package and guidelines

Conceptualizing microbe–plasmid communities as complex adaptive systems
Trends in Microbiology
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01 Jul 2023
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doi:10.1016/j.tim.2023.01.007

The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification
Nature Ecology & Evolution
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19 Oct 2020
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doi:10.1038/s41559-020-01312-z

The multilayer nature of ecological networks
Nature Ecology & Evolution
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23 Mar 2017
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doi:10.1038/s41559-017-0101
All
2024

Demography-based management of a lake meta-population network boosts food security in Amazonian fisheries
California Digital Library (CDL)
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08 Oct 2024
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doi:10.32942/X2HC9G

Local and regional processes drive distance decay in structure in a spatial multilayer plant‐pollinator network
Journal of Animal Ecology
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09 Sep 2024
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doi:10.1111/1365-2656.14174

Regional processes shape the structure of rumen microbial co‐occurrence networks
Ecography
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05 Sep 2024
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doi:10.1111/ecog.07430

Inductive link prediction boosts data availability and enables cross-community link prediction in ecological networks
California Digital Library (CDL)
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02 Aug 2024
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doi:10.32942/X2JS75

Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases
Nature Communications
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11 Apr 2024
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doi:10.1038/s41467-024-47272-x
2023

Practical guidelines and the EMLN R package for handling ecological multilayer networks
Methods in Ecology and Evolution
·
18 Oct 2023
·
doi:10.1111/2041-210X.14225
EMLN package and guidelines

Ecological network analysis reveals cancer-dependent chaperone-client interaction structure and robustness
Nature Communications
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07 Oct 2023
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doi:10.1038/s41467-023-41906-2

Conceptualizing microbe–plasmid communities as complex adaptive systems
Trends in Microbiology
·
01 Jul 2023
·
doi:10.1016/j.tim.2023.01.007

Invasive species modulate the structure and stability of a multilayer mutualistic network
Proceedings of the Royal Society B: Biological Sciences
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28 Jun 2023
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doi:10.1098/rspb.2023.0132

Multilayer networks of plasmid genetic similarity reveal potential pathways of gene transmission
The ISME Journal
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09 Feb 2023
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doi:10.1038/s41396-023-01373-5
2021

The interplay between vaccination and social distancing strategies affects COVID19 population-level outcomes
PLOS Computational Biology
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20 Aug 2021
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doi:10.1371/journal.pcbi.1009319

Frequency-Dependent Competition Between Strains Imparts Persistence to Perturbations in a Model of Plasmodium falciparum Malaria Transmission
Frontiers in Ecology and Evolution
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26 May 2021
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doi:10.3389/fevo.2021.633263

Identifying flow modules in ecological networks using Infomap
Methods in Ecology and Evolution
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24 Feb 2021
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doi:10.1111/2041-210X.13569
2020

The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification
Nature Ecology & Evolution
·
19 Oct 2020
·
doi:10.1038/s41559-020-01312-z

Pan-Cancer Analysis of Mitochondria Chaperone-Client Co-Expression Reveals Chaperone Functional Partitioning
Cancers
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30 Mar 2020
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doi:10.3390/cancers12040825
2019

Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum
PLOS Biology
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24 Jun 2019
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doi:10.1371/journal.pbio.3000336
2018

Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum
Nature Communications
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08 May 2018
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doi:10.1038/s41467-018-04219-3
2017

Asymmetric disease dynamics in multihost interconnected networks
Journal of Theoretical Biology
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01 Oct 2017
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doi:10.1016/j.jtbi.2017.07.020
Temporal dynamics of direct reciprocal and indirect effects in a host--parasite network
Journal of Animal Ecology
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25 Mar 2017
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The multilayer nature of ecological networks
Nature Ecology & Evolution
·
23 Mar 2017
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doi:10.1038/s41559-017-0101
2014

Multiple effects of host‐species diversity on coexisting host‐specific and host‐opportunistic microbes
Ecology
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01 May 2014
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doi:10.1890/13-0678.1

Effects of sewage-water contamination on the immune response of a desert bat
Mammalian Biology
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01 Apr 2014
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doi:10.1016/j.mambio.2013.10.005
2013

A trade‐off between quantity and quality of offspring in haematophagous ectoparasites: the effect of the level of specialization
Journal of Animal Ecology
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23 Sep 2013
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doi:10.1111/1365-2656.12134

Phylogenetic structure of host spectra in Palaearctic fleas: stability versus spatial variation in widespread, generalist species
Parasitology
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04 Sep 2013
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doi:10.1017/s0031182013001376

Spatial variation in the phylogenetic structure of flea assemblages across geographic ranges of small mammalian hosts in the Palearctic
International Journal for Parasitology
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01 Aug 2013
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doi:10.1016/j.ijpara.2013.05.001

Phylogeny determines the role of helminth parasites in intertidal food webs
Journal of Animal Ecology
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25 Jun 2013
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doi:10.1111/1365-2656.12101

Co‐occurrence and phylogenetic distance in communities of mammalian ectoparasites: limiting similarity versus environmental filtering
Oikos
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21 Jun 2013
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doi:10.1111/j.1600-0706.2013.00646.x

FOREWORD: Evolution of culture
Israel Journal of Ecology and Evolution
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18 May 2013
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doi:10.1080/15659801.2013.865338

Temporal dynamics of direct reciprocal and indirect effects in a host–parasite network
Journal of Animal Ecology
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14 May 2013
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doi:10.1111/1365-2656.12090
2012

Host body microcosm and ectoparasite infracommunities: arthropod ectoparasites are not spatially segregated
Parasitology
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05 Sep 2012
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doi:10.1017/s0031182012001205

Effects of Anthropogenic Disturbance and Climate on Patterns of Bat Fly Parasitism
PLoS ONE
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19 Jul 2012
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doi:10.1371/journal.pone.0041487
2010

Variability in urine concentration and fecal water content of bats in a tropical deciduous forest
Journal of Mammalogy
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16 Jun 2010
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doi:10.1644/09-mamm-a-370.1